Checkout the different repos to different paths

.github/workflows/build-linux.yml

@@ -51,16 +51,23 @@ jobs:
     needs:
       - build_linux
     steps:
+      - name: Checkout application
+        uses: actions/checkout@v4
+        with:
+          path: main
+
       - name: Common setup
-        uses: ./.github/actions/flutter-common
+        uses: ./main/.github/actions/flutter-common
 
       - name: Checkout application
         uses: actions/checkout@v4
         with:
           repository: wger-project/de.wger.flutter
+          path: flathub
 
       - name: Bump version and update manifest
         run: |
+          cd flathub
           pip install pyyaml toml
           git clone https://github.com/TheAppgineer/flatpak-flutter.git --branch 0.6.1 ../flatpak-flutter
           python bump-wger-version.py ${{ inputs.ref }}
@@ -71,6 +78,7 @@ jobs:
         env:
           SSH_DEPLOY_KEY: ${{ secrets.SSH_DEPLOY_KEY }}
         with:
+          source-directory: flathub
           destination-github-username: wger-project
           destination-repository-name: de.wger.flutter
           user-email: github-actions@github.com